scAdam models
=============

.. list-table::
   :widths: 10 40 15 10 10 10 20
   :header-rows: 1

   * - Model
     - Description
     - Suspension
     - Accuracy
     - Balanced Accuracy
     - Levels
     - Reference
   * - Human_BMMC
     - Bone marrow mononuclear cell of healthy adults
     - cells
     - 0.947
     - 0.942
     - 3
     - :cite:`2021:Luecken`
   * - Human_Bone_Marrow
     - A Balanced Bone Marrow Reference
     - cells
     - 0.881
     - 0.861
     - 3
     - :cite:`2025:zeng`
   * - Human_Brain_atlas
     - Human Brain Cell Atlas v1.0
     - nuclei
     - 0.998
     - 0.998
     - 2
     - :cite:`2023:siletti`
   * - Human_Brain_Dementia
     - Cross-dementia human brain snRNA-seq
     - nuclei
     - 0.999
     - 0.999
     - 2
     - :cite:`2024:Rexach`
   * - Human_Brain_DLPFC
     - Seattle Alzheimer’s disease dorsolateral prefrontal cortex
     - nuclei
     - 0.997
     - 0.997
     - 2
     - :cite:`2024:gabitto`
   * - Human_Brain_MTG
     - Seattle Alzheimer’s disease middle temporal gyrus
     - nuclei
     - 0.998
     - 0.998
     - 2
     - :cite:`2024:gabitto`
   * - Human_Breast_cancer
     - Single-cell atlas of human breast cancers
     - cells
     - 0.955
     - 0.943
     - 2
     - :cite:`2026:Chen`
   * - Human_CC_Dev_RNA
     - Multi-omic profiling of the developing human cerebral cortex (RNA)
     - nuclei
     - 0.974
     - 0.975
     - 2
     - :cite:`2023:Zhu`
   * - Human_CC_Dev_ATAC
     - Multi-omic profiling of the developing human cerebral cortex (ATAC)
     - nuclei
     - 0.916
     - 0.912
     - 2
     - :cite:`2023:Zhu`
   * - Human_Fetal
     - A human cell atlas of fetal gene expression
     - nuclei
     - 0.984
     - 0.981
     - 2
     - :cite:`2020:Cao`
   * - Human_Heart
     - Human heart CITE-seq analysis of healthy and diseased states
     - cells
     - 0.957
     - 0.956
     - 2
     - :cite:`2023:Amrute`
   * - Human_HNSCC
     - Single-cell atlas of HPV-negative Head and Neck Cancer
     - cells
     - 0.980
     - 0.981
     - 2
     - :cite:`2026:Kroehling`
   * - Human_Kidney_cell
     - scRNA-seq of the Adult Human Kidney (V. 1.5)
     - cells
     - 0.974
     - 0.974
     - 3
     - `cellxgene <https://cellxgene.cziscience.com/collections/0f528c8a-a25c-4840-8fa3-d156fa11086f>`_
   * - Human_Kidney_nucleus
     - snRNA-seq of the Adult Human Kidney (V. 1.5)
     - nuclei
     - 0.973
     - 0.972
     - 3
     - `cellxgene <https://cellxgene.cziscience.com/collections/0f528c8a-a25c-4840-8fa3-d156fa11086f>`_
   * - Human_Lung
     - Core Human Lung Cell Atlas
     - cells
     - 0.965
     - 0.964
     - 5
     - :cite:`2023:Sikkema`
   * - Human_Lung_Cancer
     - Extended single-cell lung cancer atlas
     - cells
     - 0.937
     - 0.936
     - 3
     - :cite:`2022:Salcher`
   * - Human_Optic_nerve
     - Single nuclei atlas of the human optic nerve
     - nuclei
     - 0.995
     - 0.994
     - 2
     - `cellxgene <https://cellxgene.cziscience.com/collections/05e3d0fc-c9dd-4f14-9163-2b242b3bb5c2?explainNewTab>`_
   * - Human_oropharyngeal_SCC
     - Oropharyngeal HPV+/HPV- squamous cell carcinoma and normal tissue
     - cells
     - 0.972
     - 0.968
     - 2
     - `cellxgene <https://cellxgene.cziscience.com/collections/3c34e6f1-6827-47dd-8e19-9edcd461893f>`_
   * - Human_Pancreas
     - Pancreatic islet atlas (non-diabetes, prediabetes and type 2 diabetes)
     - cells
     - 0.996
     - 0.989
     - 1
     - :cite:`2025:Bandesh`
   * - Human_PBMC
     - Peripheral blood mononuclear cells of healthy adults
     - cells
     - 0.979
     - 0.979
     - 3
     - :cite:`2021:Hao`
   * - Human_Retina_cell
     - Single cell atlas of the human retina
     - cells
     - 0.984
     - 0.979
     - 4
     - :cite:`2023:Li`
   * - Human_Retina_nucleus
     - Single nucleus atlas of the human retina
     - nuclei
     - 0.994
     - 0.994
     - 2
     - :cite:`2023:Li`
   * - Human_Subcutaneous_AT
     - Subcutaneous adipose tissue atlas
     - cells
     - 0.973
     - 0.954
     - 3
     - unpublished atlas by Laletin V. and Chechekhin V.
   * - Human_Testes
     - Single cell atlas of the human testes
     - cells
     - 0.991
     - 0.991
     - 2
     - unpublished atlas by Chechekhin V.
   * - Human_Visceral_AT
     - Visceral adipose tissue atlas
     - cells
     - 0.978
     - 0.975
     - 3
     - unpublished atlas by Chechekhin V.
   * - Mouse_Aging_Brain
     - Atlas of mouse aging brain
     - cells
     - 0.993
     - 0.993
     - 1
     - :cite:`2020:Zhao`
   * - Mouse_BAT
     - Pansci brown adipose tissue atlas
     - nuclei
     - 0.979
     - 0.945
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Retina
     - Single cell atlas of the mouse retina
     - cells
     - 0.967
     - 0.960
     - 4
     - :cite:`2024:Li`
   * - Mouse_Cerebellum
     - Single nuclei atlas of the Mouse cerebellum
     - nuclei
     - 0.999
     - 0.999
     - 2
     - :cite:`2024:Hao,2021:Kozareva`
   * - Mouse_Colon
     - Pansci colon atlas
     - nuclei
     - 0.968
     - 0.933
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Duodenum
     - Pansci duodenum atlas
     - nuclei
     - 0.964
     - 0.897
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_gWAT
     - Pansci perigonadal adipose tissue atlas
     - nuclei
     - 0.977
     - 0.947
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Heart
     - Pansci heart atlas
     - nuclei
     - 0.961
     - 0.932
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Hippocampus
     - Atlas of mouse hippocampus of health and 5xFAD mice
     - nuclei
     - 0.949
     - 0.948
     - 2
     - unpublished atlas by Mareeva S. and Tychinin D. 
   * - Mouse_Ileum
     - Pansci ileum atlas
     - nuclei
     - 0.973
     - 0.950
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_iWAT
     - Pansci perigonadal adipose tissue atlas
     - nuclei
     - 0.977
     - 0.947
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Jejunum
     - Pansci jejunum atlas
     - nuclei
     - 0.975
     - 0.926
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Kidney
     - Pansci kidney atlas
     - nuclei
     - 0.988
     - 0.949
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Liver
     - Pansci liver atlas
     - nuclei
     - 0.986
     - 0.950
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Lung
     - Pansci lung atlas
     - nuclei
     - 0.975
     - 0.953
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Muscle
     - Pansci muscle atlas
     - nuclei
     - 0.975
     - 0.942
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Stomach
     - Pansci stomach atlas
     - nuclei
     - 0.962
     - 0.914
     - 2
     - :cite:`2024:Zhang`
   * - Mouse_Testes
     - Atlas of mouse testes 
     - cells
     - 0.975
     - 0.975
     - 3
     - unpublished atlas by Chechekhin V.
   * - Macaque_Cerebellum
     - Single nuclei atlas of the Macaque cerebellum
     - nuclei
     - 0.995
     - 0.994
     - 2
     - :cite:`2024:Hao`
   * - Marmoset_Cerebellum
     - Single nuclei atlas of the Marmoset cerebellum
     - nuclei
     - 0.988
     - 0.987
     - 2
     - :cite:`2024:Hao`