scparadise.scnoah.cell_counter

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scparadise.scnoah.cell_counter#

scparadise.scnoah.cell_counter(adata, sample=None, celltype=None)[source]#

Count cell types in samples. Usefull for integrated/concatenated dataset.

Parameters:

  • adata (AnnData) – Annotated data matrix.

  • sample (str, (default: None)) – Samples names key in adata.obs dataframe.

  • celltype (str, (default: None)) – Level of cell annotation to show metrics. Key in adata.obs dataframe.

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