scparadise.scnoah.pred_status

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scparadise.scnoah.pred_status#

scparadise.scnoah.pred_status(adata, celltype=None, pred_celltype=None, key_added='pred_status')[source]#

Find correct and incorrect predictions. Returns prediction status in adata.obs.

Parameters:

  • adata (AnnData) – Annotated data matrix. Function uses adata.X for oversample.

  • celltype (str, (default: None)) – Cell annotation. Key in adata.obs dataframe.

  • pred_celltype (str, (default: None)) – Predicted cell annotation. Key in adata.obs dataframe.

  • key_added (str, (default: 'pred_status')) – Key to add in adata.obs

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