scparadise.sceve.predict

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scparadise.sceve.predict#

scparadise.sceve.predict(adata, path_model='', rna_modality_name='rna', second_modality_name='adt', return_mdata=True)[source]#

Predict (impute) the second modality in cells using the pretrained scEve model.

Parameters:

  • adata (AnnData) – Annotated data matrix.

  • path_model (str, path object) – Path to the folder containing the trained scEve model.

  • rna_modality_name (str, (default: 'rna')) – Name of RNA (GEX) modality in MuData object.

  • second_modality_name (str, (default: 'adt')) – Name of protein (ADT) or ATAC-seq modality in MuData object.

  • return_mdata (bool, (default: True)) – If set ‘True’ return MuData object. If set ‘False’ return AnnData object with predicted (imputed) modality.

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