scparadise.scnoah.regres_status

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scparadise.scnoah.regres_status#

scparadise.scnoah.regres_status(adata_prot, adata_pred_prot, metric='RMSE')[source]#

Compute regression status of cells to visualize on UMAP.

Parameters:

  • adata_prot (AnnData) – Annotated data matrix with proteins. Test dataset not used for model tuning or training.

  • adata_pred_prot (AnnData) – Annotated data matrix with predicted proteins.

  • metric (str (default: 'RMSE')) – Metric used for regression status calculation. Available metrics: RMSE, MeanAE, MedianAE, EVS, r2_score. Root mean squared error (RMSE), mean absolute error (MeanAE), median absolute error (MedianAE) : lower value - better prediction. Coefficient of determination (R² score), explained variance score (EVS) : higher value - better prediction

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